swc_mesher.MakeNeuronMetaPropGroup Class Reference

Main GUI property group. More...

Inheritance diagram for swc_mesher.MakeNeuronMetaPropGroup:

Collaboration diagram for swc_mesher.MakeNeuronMetaPropGroup:

Public Member Functions
def	draw
def	make_new_cable_model
	Function to make a new cable model from scratch. More...
def	cable_model_add_func
	Functions to add/remove cable models from the list of cable models to edit. More...
def	cable_model_remove_func
def	cable_model_remove_all_func
def	check_duplicate_verts
	Functions to edit the cable model. More...
def	update_cable_model_post_edit
def	make_spheres_from_object
def	update_cable_model_from_spheres
def	export_cable_model
def	hide_vertex_spheres
def	delete_vertex_spheres
def	file_name_change
	Functions to make the surface mesh. More...
def	read_segments_from_object
def	read_segments_from_file
def	perform_analysis
def	get_swc_from_mesh_stick
def	build_neuron_stick_from_file
def	build_neuron_meta_from_segments

Public Attributes
	active_object_index
	num_nodes_in_object
	num_lines_in_file
	num_nodes_in_file
	num_segments_in_file
	largest_radius_in_file
	smallest_radius_in_file
	min_x
	max_x
	min_y
	max_y
	min_z
	max_z
	file_analyzed

Static Public Attributes
tuple	neuron_file_name = StringProperty( subtype='FILE_PATH', default="", update=file_name_change)
tuple	neuron_file_data = StringProperty( default="" )
tuple	convert_to_mesh = BoolProperty( name="Convert to Mesh", default=False )
tuple	show_analysis = BoolProperty( default=False )
tuple	show_stick = BoolProperty( default=False )
tuple	file_analyzed = BoolProperty( default=False )
tuple	num_lines_in_file = IntProperty( default=-1 )
tuple	num_segments_in_file = IntProperty( default=-1 )
tuple	num_nodes_in_file = IntProperty( default=-1 )
tuple	largest_radius_in_file = FloatProperty( default=-1 )
tuple	smallest_radius_in_file = FloatProperty( default=-1 )
tuple	min_x = FloatProperty( default=-1 )
tuple	max_x = FloatProperty( default=-1 )
tuple	min_y = FloatProperty( default=-1 )
tuple	max_y = FloatProperty( default=-1 )
tuple	min_z = FloatProperty( default=-1 )
tuple	max_z = FloatProperty( default=-1 )
tuple	scale_file_data = FloatProperty( default=1.0, precision=4, description="Scale factor applied to data read from a file" )
tuple	meta_ball_scale_factor = FloatProperty( default=1.0, precision=4, description="Scale factor applied to mesh radius" )
tuple	mesh_resolution = FloatProperty( default=0.1, precision=4, description="Intended resolution of the final mesh" )
tuple	min_forced_radius = FloatProperty( default=0.0, precision=4, description="Smallest radius allowed in all segments (smaller forced up to this radius)" )
tuple	num_segs_limit = IntProperty( default=0, description="Only generate this number of segments (useful for testing settings in large neurons)" )
tuple	new_sphere_radius = FloatProperty( default=1, description="Radius of new vertex spheres" )
tuple	cable_model_list = CollectionProperty(type=CableModelObject, name="Cable Model List")
tuple	active_object_index = IntProperty(name="Active Object Index", default=0)

Detailed Description

Main GUI property group.

Member Function Documentation

def swc_mesher.MakeNeuronMetaPropGroup.build_neuron_meta_from_segments	(		self,
			context,
			segments
	)

def swc_mesher.MakeNeuronMetaPropGroup.build_neuron_stick_from_file	(		self,
			context
	)

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def swc_mesher.MakeNeuronMetaPropGroup.cable_model_add_func	(		self,
			context
	)

Functions to add/remove cable models from the list of cable models to edit.

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def swc_mesher.MakeNeuronMetaPropGroup.cable_model_remove_all_func	(		self,
			context
	)

def swc_mesher.MakeNeuronMetaPropGroup.cable_model_remove_func	(		self,
			context
	)

def swc_mesher.MakeNeuronMetaPropGroup.check_duplicate_verts	(		self,
			context
	)

Functions to edit the cable model.

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def swc_mesher.MakeNeuronMetaPropGroup.delete_vertex_spheres	(		self,
			context
	)

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def swc_mesher.MakeNeuronMetaPropGroup.draw	(		self,
			layout
	)

def swc_mesher.MakeNeuronMetaPropGroup.export_cable_model	(		self,
			context,
			fpath
	)

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def swc_mesher.MakeNeuronMetaPropGroup.file_name_change

(

self

)

Functions to make the surface mesh.

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def swc_mesher.MakeNeuronMetaPropGroup.get_swc_from_mesh_stick	(		self,
			context
	)

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def swc_mesher.MakeNeuronMetaPropGroup.hide_vertex_spheres	(		self,
			context,
			flag
	)

def swc_mesher.MakeNeuronMetaPropGroup.make_new_cable_model	(		self,
			context
	)

Function to make a new cable model from scratch.

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def swc_mesher.MakeNeuronMetaPropGroup.make_spheres_from_object	(		self,
			context
	)

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def swc_mesher.MakeNeuronMetaPropGroup.perform_analysis	(		self,
			segments
	)

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def swc_mesher.MakeNeuronMetaPropGroup.read_segments_from_file

(

self

)

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def swc_mesher.MakeNeuronMetaPropGroup.read_segments_from_object	(		self,
			context
	)

def swc_mesher.MakeNeuronMetaPropGroup.update_cable_model_from_spheres	(		self,
			context
	)

def swc_mesher.MakeNeuronMetaPropGroup.update_cable_model_post_edit	(		self,
			context
	)

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Member Data Documentation

tuple swc_mesher.MakeNeuronMetaPropGroup.active_object_index = IntProperty(name="Active Object Index", default=0)

static

swc_mesher.MakeNeuronMetaPropGroup.active_object_index

tuple swc_mesher.MakeNeuronMetaPropGroup.cable_model_list = CollectionProperty(type=CableModelObject, name="Cable Model List")

static

tuple swc_mesher.MakeNeuronMetaPropGroup.convert_to_mesh = BoolProperty( name="Convert to Mesh", default=False )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.file_analyzed = BoolProperty( default=False )

static

swc_mesher.MakeNeuronMetaPropGroup.file_analyzed

tuple swc_mesher.MakeNeuronMetaPropGroup.largest_radius_in_file = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.largest_radius_in_file

tuple swc_mesher.MakeNeuronMetaPropGroup.max_x = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.max_x

tuple swc_mesher.MakeNeuronMetaPropGroup.max_y = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.max_y

tuple swc_mesher.MakeNeuronMetaPropGroup.max_z = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.max_z

tuple swc_mesher.MakeNeuronMetaPropGroup.mesh_resolution = FloatProperty( default=0.1, precision=4, description="Intended resolution of the final mesh" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.meta_ball_scale_factor = FloatProperty( default=1.0, precision=4, description="Scale factor applied to mesh radius" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.min_forced_radius = FloatProperty( default=0.0, precision=4, description="Smallest radius allowed in all segments (smaller forced up to this radius)" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.min_x = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.min_x

tuple swc_mesher.MakeNeuronMetaPropGroup.min_y = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.min_y

tuple swc_mesher.MakeNeuronMetaPropGroup.min_z = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.min_z

tuple swc_mesher.MakeNeuronMetaPropGroup.neuron_file_data = StringProperty( default="" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.neuron_file_name = StringProperty( subtype='FILE_PATH', default="", update=file_name_change)

static

tuple swc_mesher.MakeNeuronMetaPropGroup.new_sphere_radius = FloatProperty( default=1, description="Radius of new vertex spheres" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.num_lines_in_file = IntProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.num_lines_in_file

tuple swc_mesher.MakeNeuronMetaPropGroup.num_nodes_in_file = IntProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.num_nodes_in_file

swc_mesher.MakeNeuronMetaPropGroup.num_nodes_in_object

tuple swc_mesher.MakeNeuronMetaPropGroup.num_segments_in_file = IntProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.num_segments_in_file

tuple swc_mesher.MakeNeuronMetaPropGroup.num_segs_limit = IntProperty( default=0, description="Only generate this number of segments (useful for testing settings in large neurons)" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.scale_file_data = FloatProperty( default=1.0, precision=4, description="Scale factor applied to data read from a file" )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.show_analysis = BoolProperty( default=False )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.show_stick = BoolProperty( default=False )

static

tuple swc_mesher.MakeNeuronMetaPropGroup.smallest_radius_in_file = FloatProperty( default=-1 )

static

swc_mesher.MakeNeuronMetaPropGroup.smallest_radius_in_file

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The documentation for this class was generated from the following file:

• swc_mesher.py